rs220574648 SNP Detail

Summary

• ID
  rs220574648
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13262941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACATCGG GTCTGCACCT
  CAGCAGGTCC ATGTTTGCTT TACTCTTCTG TCCCTTTAAT CTCGTATCTC CTCAGTTCTT
  TGATTATTGG TGCTTTGTGG AAGTGCATGC GTGCGTGCGT GCGTGCGTGC GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTTGTGCATT TCTTGTAGCT TCTTGCTGTG AATGGACCCA
  W
  GTCTTCCTTA CACATAGGAA TGTTTGTCCC ATAAGGCAAA CTCTGCCTCT TCTCTTTTTT
  GTTTTGTTGC GGGCGGGGGG CGGGGGCGGG GGCGGGGGGC GGGGGGCGGG GGCGGGGGGC
  GGGGCGGGGG GCGGGGCGGG GGGGAGTATG TCCAGGCTTC ACGCCTTGCT GGCTAGCGTC
  CAGGAGACCT ACCTTGTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505128	CHEV_8_13212941	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220574648					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13262941 () rs orientation: forward

Symbol	Name	Function Class
Gm63815	predicted gene, 63815	within coordinates
Rr368495	regulatory region 368495	526 bp upstream
Rr368496	regulatory region 368496	1031 bp upstream
Rr659886	regulatory region 659886	64 bp proximal
Rr659887	regulatory region 659887	501 bp proximal
Rr659888	regulatory region 659888	1092 bp proximal
Rr659889	regulatory region 659889	1142 bp proximal