rs220578477 SNP Detail

Summary

• ID
  rs220578477
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106768680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTAATTT TTTTTTTTAA
  CTCGGGTACT CAGAAGTGCA CAGAGCCCTT AGGTTGCTGG GGTCCTTGTA CCCAGTTGCA
  TGCTGGGAAT GAACATTACC CAAGTGACCC ACACACAACC CTCTCTGCTC TTTTCAAGTT
  TAAGTCTAGA GTGGACACGT GTCCTTGAGG GAACTCATTG TGACCTCATA AGGGACAGAT
  W
  GAAGGCTGAA GCAAATGATC AAAATGCTCC TCATTCCAAA TACATCGAAC CCCCAAGTGC
  AGCTTAGTAA CCCCGAGACG GTTGCGGCCC ACAGGATGCC TTCCTGTAAT CGCTAAAGTG
  ATGGGAAGAC AAAAACTCCC GGGATGTGGG CTTCCGGCCA AGTTATTAAC GCTACTGAAC
  CGACGCGTTC CCTTAAATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378838658	MGP_WTSI_9_106793812	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220578477					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378838658	MGP_WTSI_9_106793812	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106768680 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	30 bp upstream
Cpgi22278	CpG island 22278	within coordinates
Dock3	dedicator of cyto-kinesis 3	1344 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rr368849	regulatory region 368849	419 bp upstream
Rr686409	regulatory region 686409	77 bp distal
Rr686410	regulatory region 686410	within coordinates
Rr686411	regulatory region 686411	306 bp proximal
Rr686412	regulatory region 686412	474 bp proximal
Rr686413	regulatory region 686413	488 bp proximal
Rr686414	regulatory region 686414	744 bp proximal
Rr686415	regulatory region 686415	1953 bp proximal
Tssr86942	transcription start site region 86942	1270 bp downstream
Tssr86943	transcription start site region 86943	633 bp upstream
Tssr86944	transcription start site region 86944	969 bp upstream
Tssr86945	transcription start site region 86945	995 bp upstream
Tssr91353	transcription start site region 91353	108 bp upstream
Tssr91354	transcription start site region 91354	90 bp upstream
Tssr91355	transcription start site region 91355	84 bp upstream
Tssr91356	transcription start site region 91356	43 bp upstream
Tssr91357	transcription start site region 91357	427 bp downstream
Tssr91358	transcription start site region 91358	450 bp downstream
Tssr91359	transcription start site region 91359	484 bp downstream