rs220580342 SNP Detail

Summary

• ID
  rs220580342
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7241769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGCTGGGTT CTCATCCTTC GGCTCCTTCT
  CGGGCTGCCT ctcaggctca ggctcaggct caggctcagg ctcaggctca ggctcCTGTA
  Agggctcggg ttcgggctcc ggctcgggct ccggcttctg ttcgggttcc ggctccggct
  S
  gggctcgggc tcgggctccg gctcgggctc tggctggggc tccggctcgg gctcccgctc
  cggctccggc tcgggctccc gctcgggctc ccgctcgggc tccggctcgg gctccggctc
  gggctcctgc tccagctccA GCTTGAGCTC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325887768	CHEV_X_6952656	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220580342					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7241769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22566	CpG island 22566	within coordinates
Gm14379	predicted gene 14379	395 bp upstream
Rr4554	regulatory region 4554	1632 bp proximal
Rr8710	regulatory region 8710	within coordinates
Usp27x	ubiquitin specific peptidase 27, X chromosome	within coordinates