rs220580353 SNP Detail

Summary

• ID
  rs220580353
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37166766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGCCTC CCTCCCCAGC
  CCTGCTCACC AGCTGTCCCT AGAGAAGGCG CGAAGGAACC AGACACCAGG AGCCAGGGAG
  GACCGCATCT TGAGGCGCCG GCACTCGAAG CTGAGACTAT GGAGGGTGCA GAGCCGGCGC
  GCGTCCCGGC CAGCGGCGGC AGCGATTTAA ATGCCCCGCC GACTGGCCCG CCCCAGGCAG
  K
  CCCATGGCCA GAGCCTCCGC CCCTTGAACA TGACCGGCCT GCCCTCTAGG TCGCGCCGAG
  TGCAAGTCCT AGCTATCCCT CTGTGCTCAC TAGCCACTGT TTTCTATGTA CTGCCATCTG
  TTTTCTCGAA CTTTCTCTCC TAGTCAGAAA CCAGCAGTCT TGAGTTTCCT GGGGCTCCTC
  TTTCTTGTCT GGGCTTTTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377237288	MGP_WTSI_9_37063055	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	T	G	T	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220580353					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	T	G	T	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377237288	MGP_WTSI_9_37063055	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37166766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	within coordinates
Gm48081	predicted gene, 48081	28 bp upstream
Rr676656	regulatory region 676656	67 bp distal
Rr676657	regulatory region 676657	within coordinates
Rr676658	regulatory region 676658	39 bp proximal
Rr676659	regulatory region 676659	258 bp proximal
Rr676660	regulatory region 676660	566 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	57 bp upstream
Tssr88821	transcription start site region 88821	106 bp upstream
Tssr88822	transcription start site region 88822	78 bp upstream
Tssr88823	transcription start site region 88823	51 bp upstream
Tssr88824	transcription start site region 88824	28 bp upstream
Tssr88825	transcription start site region 88825	9 bp upstream
Tssr88826	transcription start site region 88826	60 bp downstream
Tssr88827	transcription start site region 88827	153 bp downstream
Tssr88828	transcription start site region 88828	176 bp downstream
Tssr88829	transcription start site region 88829	199 bp downstream
Tssr88830	transcription start site region 88830	215 bp downstream
Tssr88831	transcription start site region 88831	260 bp downstream