rs220580688 SNP Detail

Summary

• ID
  rs220580688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:61803496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cctctgaat ctgggaatta ttgtgtttca
  gataggctgg ctggccacta agtcccagca atcctccagt ctctaccatc tacccagtta
  tggggttaaa agcagccatg accagctttt taatgtgagc tctgagctgg acttgagctt
  R
  CACTGAGCTT CTGAATGGTC TTAGATCTGT GACAACACCT CCTGAACGTT GCGATTATGG
  GTTGTAGCAC CTCATCCTGC TATGGGTTAT TGCTTTTCTA GAAATAATCT AGAAGTTGCT
  TCTATAGCAG AAAGCAACAA TGAGTTCCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142048	CHEV_4_61546293	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220580688					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:61803496 () rs orientation: forward

Symbol	Name	Function Class
Mup-ps18	major urinary protein, pseudogene 18	1963 bp upstream
Rr376581	regulatory region 376581	1618 bp upstream