rs220588163 SNP Detail

Summary

• ID
  rs220588163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115437362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTGAAC TCAGGACCTT
  TGGAAGAGCA GTCAGCGCTC TTACCCGCTC AGCCATCTCA CCAGCCCCAA CCTGTGCGTT
  CTTTAAATAA TTATTTTGGT TTTTTTAATC ATGTATGTCT GTGTGCATGA AGGCAGAGAT
  CAGAGGAATA GATTCCTTAG AGCTGGAGTT CTGTTGTGAA GCAACTGACA CTGGCGCTGG
  R
  AATCAAACTC CCGTCCTCTG AAACAACAAT ACGCTCTTAA CCCCTGAGTC ACCTCTCCAG
  ACCCTAAAAT CTGTGTATTT TACTGTGTTG GTGTGAAGAA GAGGGGACAG TGGTGGAAAT
  CAGGATGGGA CAGGAGCTCC GACCTAAAGA TAATAAAGAA GGGGAAACGC TGTCCTGTTG
  AGACCCCTTG TGTCTTCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320892534	CHEV_3_115346631	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220588163					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115437362 () rs orientation: forward

Symbol	Name	Function Class
Rr65100	regulatory region 65100	1039 bp proximal
Rr367536	regulatory region 367536	1275 bp downstream
Rr367537	regulatory region 367537	707 bp downstream
Rr397953	regulatory region 397953	779 bp upstream