rs220589134 SNP Detail

Summary

• ID
  rs220589134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31766562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGAACTC AGCAAGATGT
  GCACACTAGC CAGGGCCAAT GGCACAAGCC TGCAATCCCA GTTACTCTGG AGCCTGGGAC
  AGGGGGAATG CAAGCTCAAG GCCTGATAGG GCTACAGATT ATGTTCAAGG CAGTCTGGCC
  AATTGAGTGA ACACCAATGT CAAAAAATTT AAAAATTAAC AAAAAGTATA ATGTCAGAAA
  Y
  CACCTAAATA GAGAGCAGGC TGAAGTATGT CAGTTATTTA GAAACCAGAG AGTTAAAGGA
  TGACGTGAGA AAAGAAAATA GCAAGAAGGA GGAGGGGCTC TTGAAACTCT GGTAGTCAGT
  TCTTCCCAAA CAGTATGGCT TGTTACAAAG AATCTATTAT GATCACAAAA CTCTAGTTCT
  AAATGACCTT CTGGGAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400176096	MGP_WTSI_18_31793163	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220589134					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400176096	MGP_WTSI_18_31793163	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31766562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	328 bp proximal
Gm58914	predicted gene, 58914	within coordinates
Rr370349	regulatory region 370349	999 bp upstream
Rr405571	regulatory region 405571	634 bp upstream
Rr405572	regulatory region 405572	1288 bp upstream
Rr535275	regulatory region 535275	564 bp distal
Rr535276	regulatory region 535276	994 bp distal
Rr535277	regulatory region 535277	946 bp distal
Rr535278	regulatory region 535278	within coordinates
Rr535279	regulatory region 535279	682 bp proximal
Rr535280	regulatory region 535280	885 bp proximal
Rr535281	regulatory region 535281	951 bp proximal
Rr535282	regulatory region 535282	1465 bp proximal
Sap130	Sin3A associated protein	874 bp upstream
Tssr150348	transcription start site region 150348	807 bp upstream
Tssr150349	transcription start site region 150349	859 bp upstream
Tssr150350	transcription start site region 150350	865 bp upstream
Tssr150351	transcription start site region 150351	1565 bp upstream
Tssr152716	transcription start site region 152716	1260 bp downstream