rs220589275 SNP Detail

Summary

• ID
  rs220589275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92423520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTTTC CTTTAAATGT
  CACACTCCTA ATATTTACAC ATTTTCCCAC CTGCTTTCAA TCTGCTAGCT AGTATTCCTC
  TTGAATTTAT GCCAATTTTA CAAAACCTGT GATCATAAAC TTTGAGTAAT TTTAACTTTA
  AAAAATCAGA CTTAGAACGA GTATTTCCTT TCTCCTCCCA TTGCAGGAAG ATTTAACTAC
  R
  AGCTTCTTGA ACGCGGTCAA TTTGATTCTT TCTTCATTTT TAAGCATACA CGGAGTGTGT
  GAGACAAAGT TGTCAAAACT TTCACCCCTG CACAACTCAG TTTAAATCCT GGGACTAAAA
  GTGTAAAAAC CAGAGGACAA ATGACTTTGC ATAGACATAC TAATCAAAAC CCAAAGCAGT
  GGAGGTAGCT CCCAGGAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074146	CHEV_9_92436305	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220589275					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92423520 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	390 bp proximal
Gm37545	predicted gene, 37545	1384 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	756 bp upstream
Rr684632	regulatory region 684632	266 bp proximal
Rr684633	regulatory region 684633	1451 bp proximal
Rr684634	regulatory region 684634	1578 bp proximal
Tssr86520	transcription start site region 86520	788 bp upstream
Tssr86521	transcription start site region 86521	963 bp upstream