rs220593676 SNP Detail

Summary

• ID
  rs220593676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143816702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAGTATGG CTTGCCAGTT TCCATGTCTT
  CTTTCTGGTA TCCCACATCC CTAGCACCTT TGTGAACTGC CTTACCTTTC TAATTCTCTG
  TTGACAATTT ACCAGCAGCA GCAAATTTCC TATGACATGA TCAGCCCAGT CTTGTTCTGT
  Y
  CCGTGGTGTG GGCTTTCCCC ATTCCTCTCT GTGCAGTGCC TACTCGCTCT TCCAACCCTA
  TGTACTTTCC TTGCATTCTG TCACCCCCTT CAAGGACCCC CACGGTCTCC CTTCCTGAGT
  GGCCTATCTT GACCAATAAA ATGAACTGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320011056	CHEV_1_145788094	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220593676					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143816702 () rs orientation: forward

Symbol	Name	Function Class
Gm41964	predicted gene, 41964	within coordinates
Rr419968	regulatory region 419968	519 bp proximal