rs220598859 SNP Detail

Summary

• ID
  rs220598859
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38125087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCAGAG TACATAGCCT
  GATGCACACT TGCCTGTGTT GGTCACTCCC TTAGCCCATA CAAAGGAAGA ATGAAAACCT
  GGGAACCATG AATCTTGTTG CTTGCCACAC TAGAGGGAGG CTCACTCTGA CTTCTCAATA
  TGGGCCTTGA AGGTTGCCTC CCATTGGGAG ACTTGAGCCT GCTCCCCCCC TCCCCCGCCC
  T
  CCCCCCTCCC CCCTACACAC ACGCCCAGGT CCATCTCCTC ACCCTCTCAG TTCTACCTGC
  CAGGCTATCC AGTAGTGCTT TTTCTCTGGT TCATTTAGGT ATTGCTTGCT GTGCCTTAGA
  AATGTTGTGG TGTTAACAGT TTTTATTGTC TTGCTTCAAA CACATGTATC TTGGTTTCAT
  TGTTAACTTA TTTTTAGTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
ss388305618	MGP_WTSI_13_38032980	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
rs220598859					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388305618	MGP_WTSI_13_38032980	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38125087 () rs orientation: forward

Symbol	Name	Function Class
Rr283322	regulatory region 283322	within coordinates
Rr388285	regulatory region 388285	1980 bp upstream
Rreb1	ras responsive element binding protein 1	within coordinates