rs220598862 SNP Detail

Summary

• ID
  rs220598862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10161643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTACTCC TTGTCTGCCA
  GTCTAACGTG CTCCCGGGGT CCTCAGGGTT CCTATTAAGT TGCCCATGAA GTTAGAGGTG
  GAGGGCCTTA GCGACCAGGC TAGAAGGAGC CGGTTTCTAG AAGTAACCAC CCAGAATCCA
  AACAGCAGTG CATTCCTATA CCGGTTCATG AAAGGATGGA GCAGACCCGC TCCGTCTAGG
  Y
  TTCCCATTCT GTGTGGCTTG GGGGCCTAGG ATTTCATGGC AAGGACAGCG ATTGGTCTGG
  ATGTGTGGTG CCACTGACCA CGGACTCCAC CTCCGCTTAC AGCTTTTTTT CCCTAAGGCC
  CTCCCACCCA CCTTGTATAA CCCATATTAA CTATTCCGGA GCGGGAATGG TCAGAATGTT
  GAGGGAAATA GGGAACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401724193	MGP_WTSI_19_10258769	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220598862					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401724193	MGP_WTSI_19_10258769	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10161643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10600	CpG island 10600	334 bp distal
Fads1	fatty acid desaturase 1	within coordinates
Gm59251	predicted gene, 59251	within coordinates
Rr362958	regulatory region 362958	within coordinates
Tssr155024	transcription start site region 155024	1400 bp downstream
Tssr155025	transcription start site region 155025	1383 bp downstream
Tssr155026	transcription start site region 155026	1362 bp downstream
Tssr155027	transcription start site region 155027	1310 bp downstream
Tssr155028	transcription start site region 155028	1274 bp downstream
Tssr155029	transcription start site region 155029	1243 bp downstream
Tssr155030	transcription start site region 155030	1231 bp downstream
Tssr155031	transcription start site region 155031	1123 bp downstream
Tssr155032	transcription start site region 155032	733 bp downstream
Tssr155033	transcription start site region 155033	1868 bp upstream
Tssr158164	transcription start site region 158164	810 bp upstream