rs220599330 SNP Detail

Summary

• ID
  rs220599330
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:31999841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtgtctgt gtgtgtctgt gtgtgtgtgt
  gtgtgtgtct gtgtgtgtct gtgtgtgtgt ctgtgtgtgt ctgtgtgtgt ctgtgtgtgt
  gtgtgtctgt gtgtgtctgt gtgtgtctgt gtgtgtctgt gtgtgtgtct gtgtgtgtct
  S
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgCT GGGAACAgta tgtatgccaa
  agcataagtg tggaggtcag aagactctgc aaagtctgtt ctctcctccc aatttacttg
  ggttccaggg atcaagcgga ggtcatcagg                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325136045	CHEV_16_32181109	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220599330					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31999841 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	Intron
Rr514654	regulatory region 514654	1686 bp proximal
Rr514655	regulatory region 514655	1844 bp proximal
Tssr137951	transcription start site region 137951	1235 bp downstream
Tssr137952	transcription start site region 137952	1188 bp downstream
Tssr137953	transcription start site region 137953	1173 bp downstream
Tssr137954	transcription start site region 137954	1166 bp downstream
Tssr140795	transcription start site region 140795	1437 bp upstream
Tssr140796	transcription start site region 140796	1415 bp upstream
Tssr140797	transcription start site region 140797	1386 bp upstream
Tssr140798	transcription start site region 140798	1335 bp upstream