rs220599930 SNP Detail

Summary

• ID
  rs220599930
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101899364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCCCGG CTCCCGGGTA
  CCCAGTCCGG GCCAGCTTGA ACTCCTCTTC CCAGGACCCC TGCCCGACGG GCTCGACCCG
  GGCCTCACCT GGTGCCCTCC CCGCGGCGGG GGAGCTGGGG GCGGCGGCGG CGGCTCTGGG
  CTCAAGAAGG AAGTGAGAAC TGGAGGCCGG AGGAAGTGGG GGGGTGGGGG CCGGGCCGGC
  R
  GGGCCGGGGC GGGGCGCGGG GGCGGGCCGG CCGGGGCGGG GCGGACTAGG AAGTCGGAGG
  CCTCCCCCAC CCTCCAGCCT CGGGTTTTCT GCAAGCTTTG CCCTCCGCAC AGTCCCGCAC
  ACCCTGCTTC TCTCCACTCT TCGCCCCGTG AGCCCTGAGA CCCCTTGAGT CTGGCCTCTC
  AAGGTCAGGT CTCCCCGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss372554831	MGP_WTSI_7_109398671	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs220599930					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372554831	MGP_WTSI_7_109398671	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101899364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	39 bp upstream
Rr652562	regulatory region 652562	80 bp distal
Rr652563	regulatory region 652563	within coordinates
Rr652564	regulatory region 652564	764 bp proximal
Tssr2354	transcription start site region 2354	102 bp upstream
Tssr68328	transcription start site region 68328	464 bp downstream
Tssr68329	transcription start site region 68329	443 bp downstream
Tssr68330	transcription start site region 68330	63 bp upstream
Tssr73939	transcription start site region 73939	783 bp upstream
Tssr73940	transcription start site region 73940	736 bp upstream
Tssr73941	transcription start site region 73941	683 bp upstream
Tssr73942	transcription start site region 73942	598 bp upstream
Tssr73943	transcription start site region 73943	71 bp upstream
Tssr73944	transcription start site region 73944	34 bp upstream
Tssr73945	transcription start site region 73945	19 bp upstream
Tssr73946	transcription start site region 73946	166 bp downstream
Tssr73947	transcription start site region 73947	309 bp downstream
Tssr73948	transcription start site region 73948	334 bp downstream
Tssr73949	transcription start site region 73949	370 bp downstream
Tssr73950	transcription start site region 73950	419 bp downstream