rs220601984 SNP Detail

Summary

• ID
  rs220601984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134486499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gatgggcat tgatctggaa actaagttta
  catcctctaa ggcggaagca aatgccctta atctgctgag ccggctctcT CTGtctttga
  tgcggaagct cattatgcag gtctggctgg cctggaactt tgtgtagGAT TAAAGGTGTG
  Y
  GCCACCACAT CTAACTTCTA ACTCTTTCCA TTTTTAAGCT GAAGAACCAT GGTCTCTgtg
  tgataggata tatctgtaat cccagcgttt aagaggtaga ggcaggagga tgatcaggag
  atcagagtca tctttggcta tgtagagagt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319983170	CHEV_1_136455338	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220601984					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134486499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	1701 bp distal
Cpgi773	CpG island 773	1125 bp proximal
Gm57134	predicted gene, 57134	1659 bp upstream
Kdm5b	lysine demethylase 5B	1417 bp upstream
Rr367005	regulatory region 367005	1501 bp downstream
Rr367006	regulatory region 367006	1280 bp upstream
Rr418945	regulatory region 418945	1670 bp distal
Rr418948	regulatory region 418948	1308 bp distal
Rr418949	regulatory region 418949	927 bp proximal
Tssr8904	transcription start site region 8904	1396 bp upstream
Tssr8905	transcription start site region 8905	1429 bp upstream
Tssr8906	transcription start site region 8906	1453 bp upstream
Tssr13798	transcription start site region 13798	1759 bp upstream