rs220620131 SNP Detail

Summary

• ID
  rs220620131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128177515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCCGACG GGGTCTCTAC
  GGCCGATCCG CTGCACCTAC AACCTCTCCA GGGCCGCCCT GGCCTCCTCT CCCCTGGACT
  ACGAGCTCCG TGTGCGAGAG GCCGCGTTAC GAGTGGACGC TCCGAAATGC GACTCTGCTT
  CCTTGCTGGG TTATCACCGC TGCCCGGAGC CACCGGCTTC CCACCCCTAC CCAGTGGAAG
  Y
  TCACTGCCGG TCGCGTGCAA CCTGAGGACT GCTGGAAGGA CCGGTGAGCG CTGGGAGAGG
  AGCGCTGGCA CGTGGGAGGC GGGGCCTCGG TGTGACGCCA GCGGCTGAGG GCGGAGCTCA
  GGGGTCCAGA GGGCAGAGCC CGGATGTGGA GAAATAGACT GAGGGCGGGG CTTGGTGCGC
  GAGAGGCGGA GCCCGGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370021624	MGP_WTSI_6_128150570	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220620131					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370021624	MGP_WTSI_6_128150570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128177515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	within coordinates
Gm4691	predicted gene 4691	1598 bp downstream
Gm10010	predicted gene 10010	within coordinates
Gm66766	predicted gene, 66766	within coordinates
Gm68827	predicted gene, 68827	1627 bp downstream
Rr399953	regulatory region 399953	within coordinates
Rr639207	regulatory region 639207	238 bp distal
Rr639208	regulatory region 639208	within coordinates
Rr639209	regulatory region 639209	20 bp proximal
Rr639210	regulatory region 639210	167 bp proximal
Rr639211	regulatory region 639211	944 bp proximal
Tssr63410	transcription start site region 63410	within coordinates
Tssr63411	transcription start site region 63411	22 bp downstream
Tssr63412	transcription start site region 63412	24 bp downstream
Tssr63413	transcription start site region 63413	46 bp downstream
Tssr63414	transcription start site region 63414	86 bp downstream