rs220620808 SNP Detail

Summary

• ID
  rs220620808
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66208126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACCAGGC TGGCTGAGCC
  ACCTACCTAT CCCTGGGAAA GTCTCTTCTC CCACACCACT CCTCCTCTGC TCTGCGCGCG
  TAATTAAGCC CTCAGCAGAG GCCTTGCCTA TTAATGATCT GCCCAGTGTG TTGATGGGCC
  TGCCTAGCTG AGAGCAGGTT TTAAGAGTGA GCCATTCCAG GAAGAGAGAT CGCTCCCTTT
  Y
  CCCTGTTCCT GTGGGTATAG GAAGTTGGTG AGCCCAGATA AGCTATTCTG GGCAGCGTTG
  GAGATGCAAG GGGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTTTATGC AACCAATCCA GCTTCTGGGA AAGGATCCAT TGTGTAATAC TGGGGCTTCA
  GCCTGTGTCC CCTGGCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367317	MGP_WTSI_14_66589514	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220620808					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367317	MGP_WTSI_14_66589514	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66208126 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Cpgi6638	CpG island 6638	1579 bp distal
Rr297400	regulatory region 297400	within coordinates
Rr297401	regulatory region 297401	474 bp proximal
Tssr126247	transcription start site region 126247	939 bp downstream
Tssr126248	transcription start site region 126248	885 bp downstream
Tssr126249	transcription start site region 126249	856 bp downstream
Tssr126250	transcription start site region 126250	143 bp downstream
Tssr126251	transcription start site region 126251	86 bp downstream
Tssr126252	transcription start site region 126252	68 bp downstream
Tssr126253	transcription start site region 126253	56 bp downstream
Tssr126254	transcription start site region 126254	22 bp downstream
Tssr126255	transcription start site region 126255	8 bp downstream
Tssr126256	transcription start site region 126256	207 bp upstream
Tssr126257	transcription start site region 126257	372 bp upstream
Tssr126258	transcription start site region 126258	436 bp upstream
Tssr126259	transcription start site region 126259	487 bp upstream
Tssr126260	transcription start site region 126260	1049 bp upstream
Tssr126261	transcription start site region 126261	1119 bp upstream
Tssr126262	transcription start site region 126262	1140 bp upstream