rs220621767 SNP Detail

Summary

• ID
  rs220621767
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96318495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCCTGT TGGCTGTTAT
  GTTAATACAC TTCCCTGCAT GGTTCCCCCC TTCCTCAGCC ACCCCCCCCC CTTTAAGACA
  GGGTTTCTCT GTGTGGCCCT AGCTGTTCTA GAACTCACTC TATCAACCAG AGTAGGCCTA
  GAACTCAGAC ATCAACCAGC CCCAGCCTCC GGAGTGCTAG GATTAAAGGT GTGCACCCCG
  Y
  CCCCAGGGCT TCTCTGCATC CTATCCAGTA AATTCTTTAT GCTCTGCTTG CCTTTGTTCA
  CCAGGTTGGC TGGCCTGGTC CAACCCAACA GAGGTTCTGG GGACTTGGAA TCTAGACCCT
  GAGGTATATT CTAAGACGAC CTTTCTCTCT CTCCAAGGAA AGTCATGACG AACTGTCCCC
  TCAGTTACAC ACACCTGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323108968	CHEV_9_96336861	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220621767					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96318495 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	586 bp proximal
Cpgi22164	CpG island 22164	1061 bp proximal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	1238 bp upstream
Rr368835	regulatory region 368835	1554 bp upstream
Rr684963	regulatory region 684963	748 bp proximal
Rr684964	regulatory region 684964	1249 bp proximal
Rr684965	regulatory region 684965	1375 bp proximal
Tssr90963	transcription start site region 90963	1719 bp downstream