rs220622820 SNP Detail

Summary

• ID
  rs220622820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123258693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTCAAA ATGTTTGGGC
  CATATGAATG CTGTATTCAA AAAAAATCTT TTTTTTTTTT TTTTTTTGAG ACAGGGTTTC
  TCTGTGCAGC CCTGGCTGTC CTGGAACTCA TTCTGTAGAC CAGGCTGGCC TCGAACTCAG
  AAATCTGCCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GCATGTGCCA TCACTGCCCG
  R
  CTGTATGCAA ATTCTAATGG TGTCTTTTTT GAGGAATATG TCATTGAGAA TATGAATAGT
  TTATTACTTT ATTTTTGTGG CTAAAGTTGT TTTTCTGTAA CCTAATGTAC AAAACACTAC
  ATTTTTCGAG TTTCAATTGG ATGATTCCCC ACCTGTCCAA TTTCTAAATA GGAAATTTAT
  GTTAAGATAA ATTAAAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922354	MGP_WTSI_6_123231752	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220622820					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922354	MGP_WTSI_6_123231752	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123258693 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	55 bp downstream
Tssr58808	transcription start site region 58808	996 bp upstream
Tssr58809	transcription start site region 58809	1658 bp upstream
Tssr58810	transcription start site region 58810	1684 bp upstream
Tssr58811	transcription start site region 58811	1720 bp upstream
Tssr63019	transcription start site region 63019	162 bp upstream
Tssr63020	transcription start site region 63020	759 bp downstream
Tssr63021	transcription start site region 63021	845 bp downstream
Tssr63022	transcription start site region 63022	880 bp downstream
Tssr63023	transcription start site region 63023	908 bp downstream
Tssr63024	transcription start site region 63024	1011 bp downstream
Tssr63025	transcription start site region 63025	1064 bp downstream
Tssr63026	transcription start site region 63026	1075 bp downstream
Tssr63027	transcription start site region 63027	1124 bp downstream
Tssr63028	transcription start site region 63028	1137 bp downstream
Tssr63029	transcription start site region 63029	1168 bp downstream
Tssr63030	transcription start site region 63030	1198 bp downstream
Tssr63031	transcription start site region 63031	1255 bp downstream
Tssr63032	transcription start site region 63032	1279 bp downstream
Tssr63033	transcription start site region 63033	1304 bp downstream
Tssr63034	transcription start site region 63034	1323 bp downstream
Tssr63035	transcription start site region 63035	1344 bp downstream
Tssr63036	transcription start site region 63036	1398 bp downstream
Tssr63037	transcription start site region 63037	1428 bp downstream
Tssr63038	transcription start site region 63038	1465 bp downstream
Tssr63039	transcription start site region 63039	1524 bp downstream
Tssr63040	transcription start site region 63040	1582 bp downstream
Tssr63041	transcription start site region 63041	1631 bp downstream
Tssr63042	transcription start site region 63042	1656 bp downstream
Tssr63043	transcription start site region 63043	1666 bp downstream
Tssr63044	transcription start site region 63044	1688 bp downstream
Tssr63045	transcription start site region 63045	1779 bp downstream
Tssr63046	transcription start site region 63046	1798 bp downstream
Tssr63047	transcription start site region 63047	1821 bp downstream
Tssr63048	transcription start site region 63048	1849 bp downstream
Tssr63049	transcription start site region 63049	1864 bp downstream
Tssr63050	transcription start site region 63050	1888 bp downstream
Tssr63051	transcription start site region 63051	1940 bp downstream