rs220623368 SNP Detail

Summary

• ID
  rs220623368
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68397206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGGCTG AGCAAGCCAG
  GGGAAGCAAG ACAGTAAGGA ACATCCCTCC ATGGTCTCTG CATCAGCTCC TGCTTCCTGA
  CCTGCTTGAG TTCCAGTCCT GACTTCCTTG GTGATGAACA GCAATGTGGA AGCGTAAGCC
  TAATAAACCC TTTCCTCCTC AACTTTCTTC TTGGTCATGA TGTTTGTGCA GGAATAGAAA
  S
  CCTGACTAAG ACACCTACCA TAAAGGGCAC CTATCTTTCT GACCATTGGA CGTTAGAAGG
  TTTGGGAGCT GCCTAGGTTA CTATACTTCT AGAAGTAAAT GCTAGTCTGA AAAATTAAGT
  GATTAAACAT TCAAAGCATT TTCTTTTTTT AATTGAAAAG GTCACAAGCG ATCACATTTA
  AAAGGAACTT GAGTCTGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354348919	MGP_WTSI_2_68404919	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220623368					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354348919	MGP_WTSI_2_68404919	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68397206 () rs orientation: forward

Symbol	Name	Function Class
Gm49461	predicted gene, 49461	1980 bp upstream
Gm49462	predicted gene, 49462	within coordinates
Gm74865	predicted gene, 74865	within coordinates
Gm74875	predicted gene, 74875	1245 bp upstream
Rr54646	regulatory region 54646	1488 bp proximal
Tssr18024	transcription start site region 18024	1186 bp downstream
Tssr18025	transcription start site region 18025	1700 bp upstream
Tssr18026	transcription start site region 18026	1715 bp upstream
Tssr18027	transcription start site region 18027	1730 bp upstream
Tssr24417	transcription start site region 24417	1475 bp upstream
Tssr24418	transcription start site region 24418	1464 bp upstream
Tssr24419	transcription start site region 24419	1445 bp upstream