rs220625166 SNP Detail

Summary

• ID
  rs220625166
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149984009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGAAATTT GTATTTAAAT TAACTTATGT
  AAAAAATAAA TCTTAGAGCA AATGCTTGTT TATTTTTATA CTTATTTAAG AATTGAAAAC
  TTCTGAAAAT AAAGTTTGAT TGTTTCTTTA TATCATGGCA TTGATATCTC TGAGTCATGA
  W
  CCTTAAACCA TTATCTTATG TCCTTTCATC TACAATAAGA GTgaaatgta ccttactggt
  agaacagttg cctaatgctt aggaggccct gggttctagc ttcaacactg aacaagaaaa
  ATCTAGGTTG TCCCTTAATG AAATGGTTCT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045557	CHEV_1_151955388	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220625166					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149984009 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	31 bp downstream
Tssr9287	transcription start site region 9287	1773 bp downstream
Tssr9288	transcription start site region 9288	1659 bp downstream
Tssr9289	transcription start site region 9289	1642 bp downstream
Tssr9290	transcription start site region 9290	1488 bp downstream
Tssr9291	transcription start site region 9291	1440 bp downstream
Tssr9292	transcription start site region 9292	1312 bp downstream
Tssr9293	transcription start site region 9293	1296 bp downstream
Tssr9294	transcription start site region 9294	1273 bp downstream
Tssr9295	transcription start site region 9295	1246 bp downstream
Tssr9296	transcription start site region 9296	1234 bp downstream
Tssr9297	transcription start site region 9297	1221 bp downstream
Tssr9298	transcription start site region 9298	1195 bp downstream
Tssr9299	transcription start site region 9299	1177 bp downstream
Tssr9300	transcription start site region 9300	1158 bp downstream
Tssr9301	transcription start site region 9301	1025 bp downstream
Tssr9302	transcription start site region 9302	1001 bp downstream
Tssr9303	transcription start site region 9303	925 bp downstream
Tssr9304	transcription start site region 9304	905 bp downstream
Tssr9305	transcription start site region 9305	896 bp downstream
Tssr9306	transcription start site region 9306	884 bp downstream
Tssr9307	transcription start site region 9307	858 bp downstream
Tssr9308	transcription start site region 9308	841 bp downstream
Tssr9309	transcription start site region 9309	819 bp downstream
Tssr9310	transcription start site region 9310	794 bp downstream
Tssr9311	transcription start site region 9311	771 bp downstream
Tssr9312	transcription start site region 9312	753 bp downstream
Tssr9313	transcription start site region 9313	745 bp downstream
Tssr9314	transcription start site region 9314	726 bp downstream
Tssr9315	transcription start site region 9315	634 bp downstream
Tssr9316	transcription start site region 9316	449 bp downstream
Tssr9317	transcription start site region 9317	163 bp downstream
Tssr9318	transcription start site region 9318	546 bp upstream