rs220639742 SNP Detail

Summary

• ID
  rs220639742
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78955926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA GATCCTCCTG CTTCAGTCTC
  T
  TGGGTGCTGG ATTCGAGACC TGTGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324107208	CHEV_12_80010139	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220639742					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78955926 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4796	CpG island 4796	1890 bp distal
Gm46359	predicted gene, 46359	1823 bp upstream
Gm56547	predicted gene, 56547	1774 bp upstream
Rr265602	regulatory region 265602	1725 bp distal
Rr387474	regulatory region 387474	669 bp upstream
Tssr116800	transcription start site region 116800	765 bp upstream