rs220642175 SNP Detail

Summary

• ID
  rs220642175
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66214329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAGAGA TCTCCTCAGA
  TGGAGATGGT GGGAAGGCAG GCAGGACCTG CTGAGAGCCG TGGGAATATC CTCAGCCACA
  GGGAAGTCCC ATGGCTGCAA GCAAACAAAT AAGCTGCATC GTGCCCTGAC CATGGCACTG
  AGCAGAGGTG TGGAAGGCTG TCGGGTGGGC ATCCTTCTGA TGTGCCATGT GTCTAATCCT
  K
  CCCCTCTTTC CCCTCATGTG TCCAGAAGGT GAAGATGACC GCACTGTGTG CAAGGAGATC
  CGCCGCAACT CCACAGGATG CCTGAAGATG AAGGGCCAGT GTGAAAAGTG CCAGGAGATC
  TTGTCTGTGG GTGAGTCCGG GAACCAGTGG TCATCTGACT GTGGGTCTCC AGTGACTCAC
  TGGCACTATC CTTTTCCAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367440	MGP_WTSI_14_66595717	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220642175					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367440	MGP_WTSI_14_66595717	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66214329 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Rr494180	regulatory region 494180	1036 bp proximal
Tssr126268	transcription start site region 126268	1964 bp downstream
Tssr126269	transcription start site region 126269	1902 bp downstream
Tssr126270	transcription start site region 126270	1287 bp downstream
Tssr126271	transcription start site region 126271	1260 bp downstream
Tssr126272	transcription start site region 126272	1244 bp downstream
Tssr126273	transcription start site region 126273	1221 bp downstream
Tssr126274	transcription start site region 126274	1177 bp downstream
Tssr126275	transcription start site region 126275	1164 bp downstream
Tssr126276	transcription start site region 126276	1082 bp downstream
Tssr126277	transcription start site region 126277	1056 bp downstream
Tssr126278	transcription start site region 126278	1017 bp downstream
Tssr126279	transcription start site region 126279	20 bp upstream
Tssr126280	transcription start site region 126280	50 bp upstream
Tssr129265	transcription start site region 129265	1986 bp upstream
Tssr129266	transcription start site region 129266	1953 bp upstream
Tssr129267	transcription start site region 129267	1937 bp upstream
Tssr129268	transcription start site region 129268	1871 bp upstream
Tssr129269	transcription start site region 129269	1170 bp upstream
Tssr129270	transcription start site region 129270	1123 bp upstream
Tssr129271	transcription start site region 129271	1086 bp upstream
Tssr129272	transcription start site region 129272	55 bp downstream