rs220646570 SNP Detail

Summary

• ID
  rs220646570
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110361474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGCAGC GGTGGCTCCC
  CTCCAGCTCC GGGACCCGCC TCCAACACTC GGCCCCGGGA CTTATTGTTC CGGGAGGCCG
  CAGGCTAGGC CTGGCCTGGC CGGCGGGTTG TACCCCGCCC CTGCCAGGGT CGGTGGTGCT
  GGCGCGCCGA CTGGCGGCCG GTGGGCTGCC CTGTGCGTGT CTCTTTAAGG GGCTGGGCCT
  K
  CAAGGCTGCA GGGCGGGCGG GGTGCGCGTC GCTTCGGGAG TGAGTGTGTG AGGGTGAGAG
  CGGCGGGCGG GCGGTTGCTG GAGGGAGGGA GGGAGGGAGG GAGCGAGCGA GAGAGCGAGA
  GAGCGGGCGG GCGGGCCAGC CAGCCAGCCA GCGACGCCGG CCGCCCCTGC CGCCGCCGCG
  ATCGGACCAG CGGCCGCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378905107	MGP_WTSI_9_110434910	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220646570					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378905107	MGP_WTSI_9_110434910	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110361474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22381	CpG island 22381	within coordinates
Gm69936	predicted gene, 69936	49 bp upstream
Rr687129	regulatory region 687129	1329 bp distal
Rr687130	regulatory region 687130	60 bp distal
Rr687131	regulatory region 687131	39 bp distal
Rr687132	regulatory region 687132	within coordinates
Rr687133	regulatory region 687133	202 bp proximal
Rr687134	regulatory region 687134	442 bp proximal
Rr687135	regulatory region 687135	671 bp proximal
Setd2	SET domain containing 2	within coordinates
Tssr3033	transcription start site region 3033	287 bp upstream
Tssr87391	transcription start site region 87391	32 bp upstream
Tssr87392	transcription start site region 87392	95 bp upstream
Tssr87393	transcription start site region 87393	201 bp upstream
Tssr87394	transcription start site region 87394	236 bp upstream
Tssr91630	transcription start site region 91630	44 bp upstream
Tssr91631	transcription start site region 91631	369 bp downstream
Tssr91632	transcription start site region 91632	374 bp downstream
Tssr91633	transcription start site region 91633	402 bp downstream
Tssr91634	transcription start site region 91634	426 bp downstream
Tssr91635	transcription start site region 91635	512 bp downstream
Tssr91636	transcription start site region 91636	538 bp downstream