rs220647042 SNP Detail

Summary

• ID
  rs220647042
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAGCTGA TCAGAGACCC
  TTCCAGAAGC CTAAGATGAG CCCCTTCTTC TGGGAGGAGC AGGTCCTGGT CCTGTGCCTT
  AGGTTTCATA TATAGTTCTT CTCTTTGCTC CTCTTACCCC CAGCCCCACC CCCACCCCCC
  ACATGGCTGC CCATTGCTCC TTTGAGGGTA ACTAATATAC CCTCAGAAGT TGCTTTTGTT
  W
  CTGAGTCGCT GTAGGGTCGG AATCTATCAT GTTGACCCAT CTTTGAGACA CAGAGTGACT
  GTACACTTTT GCATAGACAT ACCACATTTA CATGAGACAA ATGAGGCAGA GCAAAACACA
  GAGAATGTGG ACTTTATACT TATTCTGTTT CCATAGACAA ATTAAGTCCA TAAAGTTGAG
  GATACCAGTC TCACTTCATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352400960	MGP_WTSI_1_174137972	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220647042					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352400960	MGP_WTSI_1_174137972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	888 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1110 bp upstream
Rr396578	regulatory region 396578	301 bp downstream
Rr423485	regulatory region 423485	1048 bp distal
Rr423486	regulatory region 423486	547 bp distal
Tssr294	transcription start site region 294	1208 bp upstream
Tssr295	transcription start site region 295	1158 bp upstream
Tssr296	transcription start site region 296	1082 bp upstream
Tssr297	transcription start site region 297	1048 bp upstream
Tssr15164	transcription start site region 15164	1176 bp upstream
Tssr15165	transcription start site region 15165	1086 bp upstream
Tssr15166	transcription start site region 15166	1055 bp upstream
Tssr15167	transcription start site region 15167	135 bp upstream