rs220647211 SNP Detail

Summary

• ID
  rs220647211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20412669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTATTTCT TGAGCTCTTA
  AACTAATGTG AATTAAATGT GCTCTTTATG GGAGGTACTG TGCCAAATGA AGAAAACAAG
  AAAGATTCCT GACTTCATAA AGGCAATACT CTAGTGCTTA CCTTAGTTTA TACTTCTCTG
  GAATGACTCG TCTCCAGGAC ATGTTACATA ATTCCCAATG AGCCTGAATC ATTTCCTCCA
  Y
  GACGTTTAGA TATATGAACC TTTAGCTATA CGTAACATTT AGACAAGCTA CCTTAGCACT
  GCTTAGAAAC AGCATTTATC CTGGTTCTTA GTAAACCCAA GGCTCTCTTT CTAATTTCCA
  CTGGTGATTT CAAATGAGTC CAGAAAACAT TCAAGGGGAG AGATGCTGTG AAATTAAGAG
  AGTGTTATAT GAAAAAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325739965	CHEV_19_20509795	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220647211					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20412669 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	592 bp proximal
Gm32689	predicted gene, 32689	50 bp upstream