rs220657513 SNP Detail

Summary

• ID
  rs220657513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108220085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGGCCAC ACCTCCAAAT
  AGTGTCACTC CCTGGGCCAA GCATATTCAA ACCATCATAT CATATCTTGG GGTTATTGGC
  AGGGAAGTAG ACATAATAAC ATAGAGGGTT GATATCTACC TAGCTCTAGT GCTGTCTGAG
  GCTTATTGTA AATACAAAAG TGTTGTGTCT TTTATCTAGG AACTGAAAGA TAGAAGGTGG
  R
  ATAGAAACCA CCAATTAATA TTGATATTTA CTACAACAAA CAAGTCATGC AGCCTCCTAA
  GTGTTAGCAT TTTTATCTAG GCTCCGCCCA CAGTTACCTG GCAACAGCCA GGTGTGCCTG
  ACTCACTATA AAAGGGGCTG CTCCATTCCC CTCTCTCTTG CTCTAGCTCT GTCCTCTCTT
  CCCGCTCTCC CTCTCTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320866500	CHEV_3_108115687	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220657513					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108220085 () rs orientation: forward

Symbol	Name	Function Class
Rr583203	regulatory region 583203	1399 bp distal
Rr583204	regulatory region 583204	795 bp distal
Rr583205	regulatory region 583205	478 bp proximal
Rr583206	regulatory region 583206	1359 bp proximal
Rr583207	regulatory region 583207	1673 bp proximal
Sort1	sortilin 1	Intron
Tssr31242	transcription start site region 31242	136 bp upstream