rs220662662 SNP Detail

Summary

• ID
  rs220662662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141942349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTTGAT TGCAGGCCTA
  GTCCTGGACT ATGCATCTAT TGATACAAGG GGTAGGGTGT ACAGTGAGAT GAGACCAGGG
  TTGCAATCGC CACTTGGGTC TTAACTACTT CACTCTTTAA TGCCCTGCTT GGTGTCAGCA
  AATGAATTGG GTGCTGTTTG AGAGAGGCAG AGTCCAGCTC TCCATCATGG AGAGCTGAGC
  Y
  CAGAAAGGCA TTTAAGGGGA ATGTCCTCTC TGAGAGGTGG TGTCCATACA AGGACAGGAA
  CGCAGAGGAG CCTTGCCAGG GTCTGATCCC GGGAGCGCTT TTGGACATGT TCTACCTGTA
  TTGAGGAGGT GGATGCCTCT AAGTCCACTC TACACATGGA CACATGAGCT GTTCTGGTTC
  CCCAGGTTCA AAGCTACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373450149	MGP_WTSI_7_149574517	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220662662					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373450149	MGP_WTSI_7_149574517	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141942349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	431 bp distal
Ctsd	cathepsin D	785 bp upstream
Gm73880	predicted gene, 73880	1712 bp upstream
Rr381604	regulatory region 381604	72 bp downstream
Tssr70147	transcription start site region 70147	1601 bp downstream
Tssr70148	transcription start site region 70148	405 bp downstream
Tssr70149	transcription start site region 70149	373 bp downstream
Tssr70150	transcription start site region 70150	1574 bp upstream
Tssr70151	transcription start site region 70151	1650 bp upstream
Tssr70152	transcription start site region 70152	1666 bp upstream
Tssr70153	transcription start site region 70153	1683 bp upstream
Tssr75793	transcription start site region 75793	1929 bp upstream
Tssr75794	transcription start site region 75794	1764 bp upstream
Tssr75795	transcription start site region 75795	1733 bp upstream
Tssr75796	transcription start site region 75796	767 bp upstream
Tssr75797	transcription start site region 75797	727 bp upstream
Tssr75798	transcription start site region 75798	706 bp upstream
Tssr75799	transcription start site region 75799	677 bp upstream