rs220666909 SNP Detail

Summary

• ID
  rs220666909
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110074955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTACCGGGT AGGTATCCAC
  CCGGACCGGG ACCCCAGCCA GCCCCTTGCG CCCCACCCCA TGCCAGGGTC TCGCTGACTT
  CAGGTCCAGG TGGAGTCCCC AAGCCCTGAC AAGGGGGCGG GGCACCGCCT GGCCTACAGC
  CCGGGACCCG GCGGGAAAGG GGAGGAGGAG AGGACCTGTA GGGGGTGGAG GACACAGGCC
  W
  ACGGGGAGCA GCCCATAGCC TGTGAACAGA CAGCAGGGTG GGCTAGGGTG GGGGTGGGGT
  CTTGAGGTAG GGGCGGGGTC TGATCGGGGG CGGGGGGCCT AGATGCGATT TGTGGGCGAG
  GCTGCGGGAC GGGGCGGGGT CCGGAAGATG AGGCAAGGAT GAGCCAAAGT TGGGGGAGTA
  CCCTGACCTC GTCTCGCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378898907	MGP_WTSI_9_110148391	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220666909					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378898907	MGP_WTSI_9_110148391	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110074955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22373	CpG island 22373	within coordinates
Cspg5	chondroitin sulfate proteoglycan 5	Intron
Rr687075	regulatory region 687075	1095 bp distal
Rr687076	regulatory region 687076	346 bp distal
Rr687077	regulatory region 687077	within coordinates
Tssr87332	transcription start site region 87332	943 bp downstream
Tssr87333	transcription start site region 87333	923 bp downstream
Tssr87334	transcription start site region 87334	697 bp downstream
Tssr87335	transcription start site region 87335	470 bp downstream
Tssr87336	transcription start site region 87336	396 bp downstream
Tssr87337	transcription start site region 87337	369 bp downstream
Tssr87338	transcription start site region 87338	328 bp upstream
Tssr87339	transcription start site region 87339	1373 bp upstream