rs220669176 SNP Detail

Summary

• ID
  rs220669176
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114119964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTATGAGT AGACCCATTA
  GAAATAATGA AACGAATACT GTAGGGACAC AAGGGACTAA AGTTAATATG AATTAGTGTG
  AATATAGCAG AAAACATGTT TCACACCCAT CAGATAATTT TTTTAACTGT GCTGAGAATT
  TCCCTTTTAT TTCTGAATCC ATTTTTGAAT GAAGACCCTA AGAGCCATAG AGATGGAGTA
  W
  TGAATTAGGC AAGATCAACC TAGTGACTTA AATCCAAGCC TTTGGATTTC AAATCATAGG
  CTTTAAAAAA CAAAACAAAA CAAAAAAACC TTCAGTACAA CATGTCTTTG AATTTTGAAA
  ACCAAATTTT TTTTGAATTT GATTTCTGAA ATATAATTTA ATAATCTCTT TTGACTTTGA
  AGTCAGGAAT CAAGTGTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324533158	CHEV_13_114773636	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220669176					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114119964 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr486631	regulatory region 486631	1304 bp distal
Tssr121196	transcription start site region 121196	1933 bp downstream