rs220670109 SNP Detail

Summary

• ID
  rs220670109
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32904118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGATGCC TCCTGGGAGT
  TCAGGGACCC TGGATCCTCA GCATCTGGCT GGCTTCTGGC TTCAGCCCTT GTCATCAACC
  CTACAAGACA GAGGCCTTGT AAGGACTGTC TTCTTCACTC CAAAGCTACT TCCGGCATCC
  CCTCCAGAAG TTCTACAGAT GCAGTAATCC TTACAATTTC TTCCTACACC TGATCCTGAA
  K
  TAACAAGGTT AACCCTGGCA ACTTCATCTG TCCCCCAGGG CCATAAAACT CTGACACATA
  AAGCCCAGAC TCTAGAGGTA AGGTGGATGG ATGAACAAGA AAAGCTTCTA ACAGCCACCA
  CTCACCCACA GCCTAGAAAC CAGGCAGTGC TTTCAGAGCT GGGAATACCT TGTGGAATTC
  CTCTTTTCTT TACACTGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364466308	MGP_WTSI_5_33089423	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220670109					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364466308	MGP_WTSI_5_33089423	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32904118 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	within coordinates
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	473 bp distal
Rr609421	regulatory region 609421	280 bp distal
Rr609422	regulatory region 609422	within coordinates
Rr609423	regulatory region 609423	819 bp proximal
Rr609424	regulatory region 609424	1057 bp proximal
Rr609425	regulatory region 609425	1321 bp proximal
Tssr45794	transcription start site region 45794	650 bp downstream
Tssr45795	transcription start site region 45795	225 bp downstream
Tssr50589	transcription start site region 50589	461 bp upstream
Tssr50590	transcription start site region 50590	433 bp upstream
Tssr50591	transcription start site region 50591	422 bp upstream