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rs220673287 SNP Detail
Summary
  • ID
    rs220673287
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrX:72536988 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAATTCATTT ACCTTCAGGT
TGGGCTTAGG TCACAATCAG ATTCGGATGA TTGAGAATGG GAGCCTGAGT TTTCTGCCTA
CCCTGAGGGA ACTTCACTTG GACAACAACA AGCTGTCCCG GGTGCCTGCT GGCCTCCCAG
ATCTCAAGCT CCTCCAGGTG AGAGCTGGTT CTCCAAGACT AGATGGGGAG TTGTAGAAGG
Y
CCATTCTCTG CACCAGCCTC TTAACTGCCT GGATCTCCTG TCTCCCTTTA TAAAGGGGCA
CAGGGTAGAG AGCAGAATAA GACCTAGATT CACTTTTGGG TCTCATGTAC TCATCCAGGC
CTCAGTGGAA CAGTGTCTGC TTCGTGTTTG TGGTTGGAAA AGGGGAGTCT CCTTCCCTGA
CTTAGCTTCC AAACACATGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss403771565 MGP_WTSI_X_70738721 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220673287 SNP T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss403771565 MGP_WTSI_X_70738721 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:72536988 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Bgn biglycan within coordinates
Rr4565 regulatory region 4565 13 bp proximal
Rr6090 regulatory region 6090 within coordinates
Rr7747 regulatory region 7747 1585 bp proximal
Rr10758 regulatory region 10758 169 bp proximal
Tssr5633 transcription start site region 5633 105 bp downstream
Tssr5634 transcription start site region 5634 1315 bp downstream
Tssr5635 transcription start site region 5635 1670 bp downstream
Tssr161215 transcription start site region 161215 1378 bp downstream
Tssr161216 transcription start site region 161216 1360 bp downstream
Tssr161217 transcription start site region 161217 1321 bp downstream
Tssr161218 transcription start site region 161218 1308 bp downstream
Tssr161219 transcription start site region 161219 1247 bp downstream
Tssr161220 transcription start site region 161220 644 bp downstream
Tssr161221 transcription start site region 161221 585 bp downstream
Tssr161222 transcription start site region 161222 570 bp downstream
Tssr161223 transcription start site region 161223 400 bp downstream
Tssr161224 transcription start site region 161224 346 bp downstream
Tssr161225 transcription start site region 161225 168 bp downstream
Tssr161226 transcription start site region 161226 117 bp downstream
Tssr161227 transcription start site region 161227 67 bp downstream
Tssr161228 transcription start site region 161228 1216 bp upstream
Tssr161229 transcription start site region 161229 1249 bp upstream
Tssr161230 transcription start site region 161230 1273 bp upstream
Tssr161231 transcription start site region 161231 1290 bp upstream
Tssr161232 transcription start site region 161232 1341 bp upstream
Tssr161233 transcription start site region 161233 1413 bp upstream
Tssr161234 transcription start site region 161234 1433 bp upstream
Tssr161235 transcription start site region 161235 1498 bp upstream
Tssr161236 transcription start site region 161236 1541 bp upstream
Tssr161237 transcription start site region 161237 1595 bp upstream
Tssr161238 transcription start site region 161238 1631 bp upstream
Tssr161239 transcription start site region 161239 1680 bp upstream
Tssr161240 transcription start site region 161240 1694 bp upstream
Tssr161241 transcription start site region 161241 1730 bp upstream
Tssr161242 transcription start site region 161242 1763 bp upstream
Tssr161243 transcription start site region 161243 1927 bp upstream
Tssr161244 transcription start site region 161244 1951 bp upstream
Tssr163544 transcription start site region 163544 1946 bp upstream
Tssr163545 transcription start site region 163545 1319 bp upstream
Tssr163546 transcription start site region 163546 1255 bp upstream
Tssr163547 transcription start site region 163547 1236 bp downstream
Tssr163548 transcription start site region 163548 1342 bp downstream
Tssr163549 transcription start site region 163549 1419 bp downstream
Tssr163550 transcription start site region 163550 1474 bp downstream
Tssr163551 transcription start site region 163551 1559 bp downstream
Tssr163552 transcription start site region 163552 1685 bp downstream
Tssr163553 transcription start site region 163553 1771 bp downstream
Tssr163554 transcription start site region 163554 1790 bp downstream
Tssr163555 transcription start site region 163555 1817 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory