rs220676206 SNP Detail

Summary

• ID
  rs220676206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167616933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTTTAT CGTAGCTCTG
  CCCCACAGGG CCTGGGGCTG AGCCTGGGGT GGTGGGGATG GTGGTGGGCT GAGATTTAGC
  CAGAGCCTTG GGGCCCAGTG GGAGGCAGAT CCACATCTGC TAGCAAGACG TGTCAGCCAG
  GCCTGTCACA CTGTGGAGGC TCATCCCTGA GGTATGTGGG AGCTGGGAGG TGCCGCGGGG
  Y
  GGGCGGGTGA TGCTGTGGGG CGGAGCCAGC TGAGCTGCTG GGCGGCAAGG CTGCGTGCAG
  GTCCCAGGGA CCCCAGCAAT GATCCCTAAC CTGCGAGTGG ACCAAAGGGG TGGGGCTGGG
  GGAGGCAGAG GGCGGCAGGG TCTGCTCAGA GAGGCCTCAA ACTCACACCT TAAGAGGGTG
  TATCATTTCA AGCAGTGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356511788	MGP_WTSI_2_167600513	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220676206					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356511788	MGP_WTSI_2_167600513	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167616933 () rs orientation: forward

Symbol	Name	Function Class
Gm32287	predicted gene, 32287	within coordinates
Gm75068	predicted gene, 75068	1324 bp downstream
Rr56124	regulatory region 56124	267 bp proximal
Tssr770	transcription start site region 770	1879 bp downstream
Tssr771	transcription start site region 771	142 bp downstream
Tssr772	transcription start site region 772	657 bp upstream
Tssr773	transcription start site region 773	1742 bp upstream
Tssr21847	transcription start site region 21847	1854 bp downstream
Tssr21848	transcription start site region 21848	1821 bp downstream
Tssr21849	transcription start site region 21849	516 bp upstream
Tssr27800	transcription start site region 27800	1961 bp upstream
Tssr27801	transcription start site region 27801	44 bp upstream
Tssr27802	transcription start site region 27802	167 bp downstream
Tssr27803	transcription start site region 27803	191 bp downstream
Tssr27804	transcription start site region 27804	377 bp downstream
Tssr27805	transcription start site region 27805	454 bp downstream