rs220677315 SNP Detail

Summary

• ID
  rs220677315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:16109407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTCTCTC CCTCCCCCTT
  TTCTTTGCTA CAAGGTCTCA TACTGCTCAG GAAGCAATTC TCCTGCCTCA GCCTGTGGAG
  TGTGGAGTTT ATGGGTGTGA GCCACCATAT CTGTCTCTTT CATTTCATTC TGTACTACTT
  GGCGTTCTCC CAGAAGTCAT CCTTAACTGT CACGGTGTAG AAGGGTCAAT CCTACATTAC
  Y
  AGACTGTTTA ACGTAGTGTG CTGGTAGGAA AACAGAAACC ACCTCAGTGA CCCGAAAAGT
  TGGAACGGAT CAGGAGGCTC TTGGAAACTT GGGCAGCTTC TTTTTTTCTC TTTAGGATTC
  AGATTCCTAT CTGGAGATAA GGAGGACAGT TCCGTCCACA GATCCCTCAG TAACCCCCAG
  AGAGCCAGTG ACAATCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401853762	MGP_WTSI_19_16206533	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220677315					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401853762	MGP_WTSI_19_16206533	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:16109407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10651	CpG island 10651	141 bp proximal
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	788 bp upstream
Rr544688	regulatory region 544688	785 bp distal
Rr544689	regulatory region 544689	298 bp proximal
Rr544690	regulatory region 544690	557 bp proximal
Rr544691	regulatory region 544691	636 bp proximal
Rr544692	regulatory region 544692	799 bp proximal
Tssr155379	transcription start site region 155379	619 bp upstream
Tssr155380	transcription start site region 155380	703 bp upstream
Tssr155381	transcription start site region 155381	731 bp upstream
Tssr155382	transcription start site region 155382	769 bp upstream
Tssr155383	transcription start site region 155383	1079 bp upstream
Tssr155384	transcription start site region 155384	1258 bp upstream