rs220677963 SNP Detail

Summary

• ID
  rs220677963
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80661049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGCTGAG ATTAAAGACT
  TGTGCCACCA CCACAGGGAC ATCTGTTTAT CAAGACAAGG GATTTTTTGG CAGTCCATGA
  TTACTTGGAA CTTCCAGCAA TCCTCCTGCC TCAGCTAGGT TGAGTGGCTT TTATCACAAC
  CATAGATAGA TTTTTACTGA ATTCTGATCT TTGTATCACA CTGTAGTTTG CTCACAAAAA
  W
  AGAGAATTAG AGGGGGCTGG AGAGATGGCT CAGAGATTAA GAGTACTGAC TGCTCTTCCA
  AAGGTCCTGA GTTCAATTTC CAGCAACCAC GTGGTGGCTC ACAACCATCT ATAATGGGAT
  CTCACACCCT CTTCTGGTCT GTGTCTGAAG ACCAGAAACA ACAACAGTGT ACTCATATAA
  ATAAAATAAG TAAATCTTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025626	MGP_WTSI_10_80287960	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220677963					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025626	MGP_WTSI_10_80287960	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80661049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1912	CpG island 1912	981 bp proximal
Gm68058	predicted gene, 68058	664 bp downstream
Gm68060	predicted gene, 68060	1155 bp upstream
Oaz1	ornithine decarboxylase antizyme 1	1467 bp upstream
Rr402063	regulatory region 402063	1031 bp upstream
Rr435408	regulatory region 435408	1691 bp distal
Rr435409	regulatory region 435409	357 bp distal
Rr435410	regulatory region 435410	665 bp proximal
Rr435411	regulatory region 435411	983 bp proximal
Rr435412	regulatory region 435412	1849 bp proximal
Tssr94629	transcription start site region 94629	1152 bp upstream
Tssr94630	transcription start site region 94630	1454 bp upstream
Tssr98520	transcription start site region 98520	996 bp downstream
Tssr98521	transcription start site region 98521	1773 bp downstream