rs220679375 SNP Detail

Summary

• ID
  rs220679375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67144591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGAAAT ACATGAAAGT
  GATTATATAC TCTGTGGGAC TCTAGCTAGC CACACTATAC ATCACCCAAG ATCTCTGATT
  GACATCACTG TATTAAATGG AACCTCTCAA GGTTCCACAT CTTATTTTTC AAAATCACCT
  TAAACATTGT TGCTATAGCT ACGGCAATAG TAATGCAGTG GCAAGTAAAA GTCCCCTCTA
  Y
  ATGATGTGGG CCATAAATGA TGTTCATGTT TCCCCAAAGA AAGGACTCTA GTTTTGATGA
  TTACATATTC ACTCAGTCAG TCACATATGC TCCTCCACTG CTGTGATCCC AACTGCTCCC
  AAGCACTGTG CAAGGCTTGG CAGCAACATC AGTAACAGCC TGTGTCTGCC ATACATAGTA
  ACAGATCTCT AAATCTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730861	MGP_WTSI_11_67067267	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220679375					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730861	MGP_WTSI_11_67067267	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67144591 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	968 bp upstream
Tssr3529	transcription start site region 3529	1024 bp upstream
Tssr102200	transcription start site region 102200	1879 bp downstream
Tssr102201	transcription start site region 102201	247 bp downstream
Tssr102202	transcription start site region 102202	232 bp upstream
Tssr102203	transcription start site region 102203	292 bp upstream
Tssr102204	transcription start site region 102204	690 bp upstream
Tssr102205	transcription start site region 102205	908 bp upstream
Tssr102206	transcription start site region 102206	1012 bp upstream
Tssr102207	transcription start site region 102207	1656 bp upstream
Tssr102208	transcription start site region 102208	1826 bp upstream
Tssr102209	transcription start site region 102209	1861 bp upstream
Tssr102210	transcription start site region 102210	1879 bp upstream
Tssr102211	transcription start site region 102211	1889 bp upstream
Tssr102212	transcription start site region 102212	1911 bp upstream
Tssr108533	transcription start site region 108533	1855 bp upstream
Tssr108534	transcription start site region 108534	1161 bp upstream
Tssr108535	transcription start site region 108535	1055 bp upstream
Tssr108536	transcription start site region 108536	279 bp downstream
Tssr108537	transcription start site region 108537	291 bp downstream
Tssr108538	transcription start site region 108538	793 bp downstream
Tssr108539	transcription start site region 108539	1001 bp downstream
Tssr108540	transcription start site region 108540	1061 bp downstream
Tssr108541	transcription start site region 108541	1670 bp downstream
Tssr108542	transcription start site region 108542	1831 bp downstream
Tssr108543	transcription start site region 108543	1946 bp downstream