rs220680222 SNP Detail

Summary

• ID
  rs220680222
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154033406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCTCTCT GTCTGTCTGT CTCTCTGTCT CTCTCTCTCT
  CTCTCCCTCA CACACGCACA CACACACACA CACACACACA CACAAGGGCT TGCCCAAACC
  S
  CATCCACACA TGTCCAGATA CCTGTGTGGG GCTGCACACA CAAAAACAGC AGCCATCACA
  CCTAAACACC CAAACTTGGT TCTCACTGTC ATCGGCACA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320569695	CHEV_2_154017222	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220680222					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154033406 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	658 bp distal
Rr567775	regulatory region 567775	452 bp distal
Rr567776	regulatory region 567776	410 bp distal
Rr567777	regulatory region 567777	704 bp proximal
Tssr20971	transcription start site region 20971	727 bp downstream
Tssr20972	transcription start site region 20972	718 bp downstream
Tssr20973	transcription start site region 20973	704 bp downstream
Tssr20974	transcription start site region 20974	654 bp downstream
Tssr20975	transcription start site region 20975	629 bp downstream
Tssr20976	transcription start site region 20976	213 bp downstream
Tssr20977	transcription start site region 20977	1869 bp upstream