rs220684855 SNP Detail

Summary

• ID
  rs220684855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19240848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAGCA AACCTCTGGC
  TTTGCCCAAG AGTAAAGCTG AATTTAGGAA ACAGGACCAG AATGGATAGG GGCTAAGCTA
  CTTGATAGCC ACAGAACCTG GGTTGGGGAG CCCGGAATTG TGCTAAGAAT ATCAAAGAAG
  ATGCGAGGAT TCGGCTTCTG TCGGCATTGA TCAAATGCTA CCACGCATTG GAGGCCTCGG
  Y
  GATCCAGGAA CAAAAACAGA GTCAGATGCC ACAGGTGGTA CGAATGTTCA CCAAGAGGCA
  GAGTCAGGTG GGGGGACACA GAGTGACAGC CTAGGCTCTA GGTCCCGGGT CCTGCTCGGG
  CTCCATACCA GGGACCCCTC GTATGTCCGG CAGCAAGCGA CAGCCAGCCA CGATATCCAG
  GCGCTCGGCG AGCGCGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370750908	MGP_WTSI_7_20092272	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220684855					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370750908	MGP_WTSI_7_20092272	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19240848 () rs orientation: forward

Symbol	Name	Function Class
Bloc1s3	biogenesis of lysosomal organelles complex-1, subunit 3	within coordinates
Cpgi18495	CpG island 18495	within coordinates
Gm74038	predicted gene, 74038	475 bp upstream
Rr155319	regulatory region 155319	248 bp distal
Rr167175	regulatory region 167175	within coordinates
Rr400150	regulatory region 400150	1599 bp upstream
Trappc6a	trafficking protein particle complex 6A	1747 bp upstream
Tssr64863	transcription start site region 64863	397 bp upstream
Tssr64864	transcription start site region 64864	1791 bp upstream
Tssr64865	transcription start site region 64865	1820 bp upstream
Tssr64866	transcription start site region 64866	1837 bp upstream
Tssr70924	transcription start site region 70924	229 bp upstream
Tssr70925	transcription start site region 70925	1369 bp downstream
Tssr70926	transcription start site region 70926	1398 bp downstream
Tssr70927	transcription start site region 70927	1457 bp downstream