rs220685422 SNP Detail

Summary

• ID
  rs220685422
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137190420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGTGTGT CAGGCCCTGT
  CTACCCCCTT CAGCCTTTCT TTTTCCTGTT CTTTTAATTT GTTACTATTA GCGGTTGCAC
  TGGAGCTCAC AAAACTCCAC CTGCTTTTGT CTTCCAAGTG CTAAGAATAA AGAACTGTGT
  CCTCCCTGAT TGGCTTTTGA TGTTTGATTG TTGTTTAATG CTTGATGTCT TGAGAATTCG
  K
  CTCACAGTGG GCGGTTCATC CTTGGTAGGA TAGGAAAGCA GATGGAGCCC CACTCTTCCA
  GAGCCACAGC TTCTCCAGTT TCCTGCCTCA GGTTCCTGCC TTGAAATTCC TGCTGTGGCT
  TCCCCAGTTG ACTATGTTTG AATGAGATCG GCCCCCTCAG CTTTTATGTT TGAATTCTTT
  TTCTCAGTGG CGGCCATAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366873513	MGP_WTSI_5_137634206	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220685422					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873513	MGP_WTSI_5_137634206	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137190420 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	780 bp upstream
Tssr49319	transcription start site region 49319	616 bp downstream
Tssr49320	transcription start site region 49320	604 bp downstream
Tssr53954	transcription start site region 53954	686 bp upstream
Tssr53955	transcription start site region 53955	670 bp upstream
Tssr53956	transcription start site region 53956	651 bp upstream
Tssr53957	transcription start site region 53957	634 bp upstream
Tssr53958	transcription start site region 53958	579 bp upstream
Tssr53959	transcription start site region 53959	566 bp upstream
Tssr53960	transcription start site region 53960	500 bp upstream
Tssr53961	transcription start site region 53961	401 bp upstream
Tssr53962	transcription start site region 53962	383 bp upstream
Tssr53963	transcription start site region 53963	344 bp upstream
Tssr53964	transcription start site region 53964	304 bp upstream
Tssr53965	transcription start site region 53965	279 bp upstream
Tssr53966	transcription start site region 53966	580 bp downstream
Tssr53967	transcription start site region 53967	606 bp downstream