rs220693424 SNP Detail

Summary

• ID
  rs220693424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:83329340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTTGTG CTGAGTCCAT
  TAGCATGAGC CACCACCTAT TTGTGCAATG ATTGTTTGTT TGTTTTTGTT TTTTGAGACA
  GGGTTTTTCT GTGTAGCTCT GGCTGTCCTG GAACTCACTC TGTAGACCAG GCTGGCCTTG
  AACTCAGAAA TCCACCTGCC TCTGCCTCCT GAGTGCTGGA ATTAAAGGCG TGTGCAACCA
  Y
  TGCCCAGCTT CTGCAAAGAT TCTTAAAGTC CCCTGTCCTG TTGGAGGGAA CATGCTACAA
  TACAGACTGC GCATGCGTGG CTCCACATTA CTGACAATCC GCTCCAAGCC CTAACCTCCT
  TTCCAACTCT ATTCCCTATT CCACTTCTTC CCCAAAATGT CTCCCAGCAC CTCTTTCGGC
  TGTGTTAGGT TTGGACTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384069638	MGP_WTSI_11_83252016	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220693424					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384069638	MGP_WTSI_11_83252016	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83329340 () rs orientation: forward

Symbol	Name	Function Class
1700020L24Rik	RIKEN cDNA 1700020L24 gene	Intron
Cpgi3414	CpG island 3414	1571 bp proximal
Rr452957	regulatory region 452957	1642 bp proximal
Rr452958	regulatory region 452958	1983 bp proximal
Tssr3609	transcription start site region 3609	787 bp downstream
Tssr103697	transcription start site region 103697	863 bp downstream
Tssr103698	transcription start site region 103698	843 bp downstream
Tssr103699	transcription start site region 103699	806 bp downstream
Tssr103700	transcription start site region 103700	796 bp downstream
Tssr103701	transcription start site region 103701	1439 bp upstream
Tssr103702	transcription start site region 103702	1883 bp upstream