rs220693858 SNP Detail

Summary

• ID
  rs220693858
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132237183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGAGAGG AAGGGATTCT
  GCGGAAGGGG GCGGGGAGGA GGAGTGGTCG GGTCTCTCCG GCCGGGATTT GCCTGGACTT
  GAAGACGCTC GCTTTAGCAG AGAACAAACC CAAAGAGCCA CGAGAAGGCG TCCCCTCTCA
  TTGGCCAGGA GTCCGAAGGA GCCAGGGAGG GCTCCGCATC CCCCTCCCTC CCAGGGTGGT
  G
  GTGGGGAGGG TAAAGAGAGA GAGGGCAGTG GGGAGGGGAA GGGAGAGCGG AGGCTGCAGT
  TGATGCAACC CTAGCCCTAG CTTACGTGCT CTCAGACCCT AAGCCCGGGG GGAGCGCACC
  AGACTTAGAC CGGGTCTGCC CGAAGCTCGG CGGTGGCTGG AGGAGAGCGG GTTCGCCCGG
  CTGTTGCTTA CCTCTCGGGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333907	CHEV_4_132065787	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220693858					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132237183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	within coordinates
Gm12981	predicted gene 12981	223 bp upstream
Rr377205	regulatory region 377205	1869 bp downstream
Rr377206	regulatory region 377206	within coordinates
Sesn2	sestrin 2	within coordinates
Tssr43678	transcription start site region 43678	584 bp downstream
Tssr43679	transcription start site region 43679	612 bp downstream
Tssr43680	transcription start site region 43680	621 bp downstream