rs220695517 SNP Detail

Summary

• ID
  rs220695517
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35018885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAGAGCT GGACATCAGC
  CTAAACTACA CAATGAGACA CTATAATAAA TAATCAAATA ATTAGAAAAG AGAGAGAGAA
  GCAGACCAAG TGGGCTAAGA ATGAGAGGTC CTTCAGAAAA TCTAAGGTAC AGACATCTGC
  CAATGGGCGC TGTTATCTCA CTTCACAAGC TTGGCCAAGA CGTGGGGGGG CGGGGGGGGG
  T
  GTGATTCAGC CTGGCTTGGT GACTCACACT TTTAATCTCA GCACTCAAGA GGCAGAGGCA
  GAGGCAGAGG CAGAGGCAGA GGCAGAGGCA GAGGCAGAGG CAGAGGCAGA GGCAGAGGCA
  GAGGCAGAGG CAGAGGCAGA GGCAGAGGAG GCAGAGGAGG CAGAGGCAGA GACAGAGGAG
  GCAGAGGAGG CAGAGGAGGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss370973309	MGP_WTSI_7_36104479	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs220695517					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370973309	MGP_WTSI_7_36104479	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35018885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	856 bp distal
Gpatch1	G patch domain containing 1	1020 bp upstream
Tssr72030	transcription start site region 72030	1023 bp upstream