rs220696383 SNP Detail

Summary

• ID
  rs220696383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53192227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCGTTA AACTAAAGAA
  TCTGAAACTA TAGTGACCAC TACGTTAGCC AGTTGCGGAA AGCTGGAGGG GAACCAGCTT
  CAACGCGTTT CTGATTATTA CCAACCCAGA GTGCAGGAGG AAGATCCTAA GTTTCCCGGT
  TTCTGGCTGT TTTGTGGCTG AGGATATAGA GTACAGTGCT AGAACACTTG CAGGCTCAGG
  R
  CCTTGGACTG GATCCCCAAC ACCACAAAAC TGAAAGGATT TTTAAATTTC ACTTATTTGT
  CACCTCTTGT TCATAGGTGC CTAACGGTGT CCAACACAGT AAACCGTGCG GGAGAGATGG
  CTCCACAGTT AATACGTGCT GTGAAACCAT ACAGACTGGG GTTTGAATCC CAATCTCGAT
  CTGTCATCGA GAACCTAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383395562	MGP_WTSI_11_53114902	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220696383					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383395562	MGP_WTSI_11_53114902	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53192227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2859	CpG island 2859	341 bp distal
Gm30525	predicted gene, 30525	1310 bp downstream
Hspa4	heat shock protein 4	943 bp upstream
Rr369205	regulatory region 369205	477 bp downstream
Rr446993	regulatory region 446993	954 bp distal
Rr446994	regulatory region 446994	453 bp distal
Tssr101379	transcription start site region 101379	1528 bp downstream
Tssr101380	transcription start site region 101380	1505 bp downstream
Tssr101381	transcription start site region 101381	568 bp downstream
Tssr107908	transcription start site region 107908	1221 bp upstream
Tssr107909	transcription start site region 107909	1202 bp upstream
Tssr107910	transcription start site region 107910	1179 bp upstream
Tssr107911	transcription start site region 107911	1059 bp upstream
Tssr107912	transcription start site region 107912	885 bp upstream
Tssr107913	transcription start site region 107913	860 bp upstream
Tssr107914	transcription start site region 107914	696 bp upstream