rs220700980 SNP Detail

Summary

• ID
  rs220700980
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90917097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA AAAGTTTCTC AGCCGGGCAT
  S
  GTGGCCCACG CCTTTAATCC CAGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323387267	CHEV_10_90543980	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220700980					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90917097 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	948 bp proximal
Ikbip	IKBKB interacting protein	1705 bp upstream
Rr402144	regulatory region 402144	1619 bp upstream
Rr436975	regulatory region 436975	1450 bp distal
Rr436976	regulatory region 436976	500 bp proximal
Rr436977	regulatory region 436977	1184 bp proximal
Tssr95222	transcription start site region 95222	856 bp upstream
Tssr95223	transcription start site region 95223	1789 bp upstream
Tssr95224	transcription start site region 95224	1801 bp upstream
Tssr95225	transcription start site region 95225	1846 bp upstream
Tssr98900	transcription start site region 98900	1321 bp downstream
Tssr98901	transcription start site region 98901	1418 bp downstream
Tssr98902	transcription start site region 98902	1448 bp downstream
Tssr98903	transcription start site region 98903	1469 bp downstream
Tssr98904	transcription start site region 98904	1548 bp downstream