rs220701265 SNP Detail

Summary

• ID
  rs220701265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72534910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACATTTG CTACCCTGTG
  AGATGGGTTT AAAACTGTAG GAGTGGGGAG GTTGAGTCAC CACAGGCTGA GGTGTATGAG
  GGTGCTCAGA GTCCCTGCAT TTCTCCCAGT GTCTGTGTGT GTCCATATGC ATGTATGTAC
  CCACCCCCTT TACACCAGCT GTGACAACAG ACTGGATGAG CCAGGCTTAT GCTGGTGATG
  R
  TGCTGGCCCC CAGGTCTGAA GACTGTGCCC AAGGAGATCT CACCTGACAC CACACTGCTA
  GACCTGCAGA ACAATGACAT TTCTGAGCTT CGCAAGGATG ACTTCAAAGG CCTCCAGCAC
  CTCTACGTAA GCCTCCTCCT GCCTCCTGCC TTTTCTGAGG AGCCAGGAGG AGTTTGATGT
  TCCTATGACT TGGAAGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771545	MGP_WTSI_X_70736643	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220701265					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771545	MGP_WTSI_X_70736643	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72534910 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	110 bp distal
Rr6090	regulatory region 6090	1891 bp proximal
Rr7746	regulatory region 7746	119 bp distal
Tssr5633	transcription start site region 5633	1962 bp upstream
Tssr161208	transcription start site region 161208	517 bp downstream
Tssr161209	transcription start site region 161209	494 bp downstream
Tssr161210	transcription start site region 161210	475 bp downstream
Tssr161211	transcription start site region 161211	429 bp downstream
Tssr161212	transcription start site region 161212	363 bp downstream
Tssr161213	transcription start site region 161213	309 bp downstream
Tssr161214	transcription start site region 161214	10 bp upstream
Tssr161215	transcription start site region 161215	661 bp upstream
Tssr161216	transcription start site region 161216	707 bp upstream
Tssr161217	transcription start site region 161217	739 bp upstream
Tssr161218	transcription start site region 161218	759 bp upstream
Tssr161219	transcription start site region 161219	817 bp upstream
Tssr161220	transcription start site region 161220	1422 bp upstream
Tssr161221	transcription start site region 161221	1436 bp upstream
Tssr161222	transcription start site region 161222	1500 bp upstream
Tssr161223	transcription start site region 161223	1666 bp upstream
Tssr161224	transcription start site region 161224	1706 bp upstream
Tssr161225	transcription start site region 161225	1890 bp upstream
Tssr161226	transcription start site region 161226	1932 bp upstream
Tssr161227	transcription start site region 161227	1976 bp upstream
Tssr163544	transcription start site region 163544	98 bp downstream
Tssr163545	transcription start site region 163545	746 bp downstream
Tssr163546	transcription start site region 163546	777 bp downstream