rs220704010 SNP Detail

Summary

• ID
  rs220704010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54598939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCTTATT GCAATGCTAG
  CCCAGTCCAG GTGGTGCAAA GGTACACTGT GAACCATGAG CAAAATAGCC TAAGGGCCAG
  AAAAACAAAA ACAAAAACCA ACCAAAAACA TGATCATCAA ATCCTTACAG AATGAAATCT
  GCATGTTTGC TGTGGTTTAA TCTACCATTG TGAAAGTCAG CCGACATCTC CATTGCCAGC
  Y
  ACTCTGTCTA GGAGGTTATC TGTTGTACTC TCACGACTTC TGTTTCAGAT CTAGGCTGTT
  TTGATTTCTG ACACAAGACC AATGCTCACC TAGAGTCAGT GACAAAGTCC AGTGGAGACA
  GAATTGTCTT CATGAATGGC TTTTTTGTTG GTTTGTTTGA GGCAGTGTCT TGCTCTGTAA
  GTCCAGCCTG TAAGTCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358013628	MGP_WTSI_3_54495440	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220704010					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358013628	MGP_WTSI_3_54495440	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54598939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	831 bp proximal
Gm65558	predicted gene, 65558	within coordinates
Rr397672	regulatory region 397672	1044 bp upstream
Rr576829	regulatory region 576829	511 bp proximal
Rr576830	regulatory region 576830	1105 bp proximal
Rr576831	regulatory region 576831	1598 bp proximal
Supt20	SPT20 SAGA complex component	1289 bp upstream
Tssr29131	transcription start site region 29131	1257 bp upstream
Tssr29132	transcription start site region 29132	1287 bp upstream
Tssr29133	transcription start site region 29133	1331 bp upstream
Tssr29134	transcription start site region 29134	1365 bp upstream
Tssr29135	transcription start site region 29135	1516 bp upstream
Tssr29136	transcription start site region 29136	1541 bp upstream
Tssr29137	transcription start site region 29137	1570 bp upstream