About   Help   FAQ
rs220721471 SNP Detail
Summary
  • ID
    rs220721471
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94843579 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGAGATGCTC CCTAGACCAG
CAAATGTTTC TTTTGTTCAA AGTATTTTTT ATTCTTTTTT TTTTTTTTTT TAATGGATAG
GGACTTGTGT GAATTGTTGG GGTTTTTTTT TTTTTTTTTT TTGGTTTTGT TTTTTTTTGT
TTTGTTTTGT TTTTTTTCCT GAAGGTGCTA TTTAACAAGG GAGAAGAGAG TGCGGGGACT
Y
CACCCTGCCC ACTCTCTACT CTCTCTCCAC TCTTCTAGTT CCTGGGCCTA TCTGATCTCT
CTCTTTCTTC TGAAACCCTC CCCTCTTGCT GCTGCTCCCT CCCCTCTGCC TCTCTCTTGG
TCTGTCCTGC ATCAGGGTTT CAGAGCACCA CTTTCCAAAG CACAAAACAG TTTTTACCCC
TGGGCTGGGA GGAAACAAGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336281 MGP_WTSI_11_94814067 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220721471 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336281 MGP_WTSI_11_94814067 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94843579 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 565 bp proximal
Gm74287 predicted gene, 74287 1498 bp downstream
Tssr3647 transcription start site region 3647 769 bp downstream
Tssr104273 transcription start site region 104273 1915 bp downstream
Tssr104274 transcription start site region 104274 1897 bp downstream
Tssr104275 transcription start site region 104275 1888 bp downstream
Tssr104276 transcription start site region 104276 1877 bp downstream
Tssr104277 transcription start site region 104277 1603 bp downstream
Tssr104278 transcription start site region 104278 1582 bp downstream
Tssr104279 transcription start site region 104279 1525 bp downstream
Tssr104280 transcription start site region 104280 1513 bp downstream
Tssr104281 transcription start site region 104281 1499 bp downstream
Tssr104282 transcription start site region 104282 1429 bp downstream
Tssr104283 transcription start site region 104283 1276 bp downstream
Tssr104284 transcription start site region 104284 1216 bp downstream
Tssr104285 transcription start site region 104285 1186 bp downstream
Tssr104286 transcription start site region 104286 1153 bp downstream
Tssr104287 transcription start site region 104287 1129 bp downstream
Tssr104288 transcription start site region 104288 1089 bp downstream
Tssr104289 transcription start site region 104289 1081 bp downstream
Tssr104290 transcription start site region 104290 1033 bp downstream
Tssr104291 transcription start site region 104291 1018 bp downstream
Tssr104292 transcription start site region 104292 921 bp downstream
Tssr104293 transcription start site region 104293 814 bp downstream
Tssr104294 transcription start site region 104294 780 bp downstream
Tssr104295 transcription start site region 104295 736 bp downstream
Tssr104296 transcription start site region 104296 712 bp downstream
Tssr104297 transcription start site region 104297 689 bp downstream
Tssr104298 transcription start site region 104298 655 bp downstream
Tssr104299 transcription start site region 104299 621 bp downstream
Tssr104300 transcription start site region 104300 601 bp downstream
Tssr104301 transcription start site region 104301 481 bp downstream
Tssr104302 transcription start site region 104302 467 bp downstream
Tssr104303 transcription start site region 104303 448 bp downstream
Tssr104304 transcription start site region 104304 406 bp downstream
Tssr104305 transcription start site region 104305 384 bp downstream
Tssr104306 transcription start site region 104306 369 bp downstream
Tssr104307 transcription start site region 104307 352 bp downstream
Tssr104308 transcription start site region 104308 279 bp downstream
Tssr104309 transcription start site region 104309 255 bp downstream
Tssr104310 transcription start site region 104310 169 bp downstream
Tssr104311 transcription start site region 104311 120 bp downstream
Tssr104312 transcription start site region 104312 51 bp downstream
Tssr104313 transcription start site region 104313 35 bp downstream
Tssr104314 transcription start site region 104314 366 bp upstream
Tssr110222 transcription start site region 110222 1855 bp upstream
Tssr110223 transcription start site region 110223 1496 bp upstream
Tssr110224 transcription start site region 110224 1432 bp upstream
Tssr110225 transcription start site region 110225 1216 bp upstream
Tssr110226 transcription start site region 110226 1176 bp upstream
Tssr110227 transcription start site region 110227 1163 bp upstream
Tssr110228 transcription start site region 110228 1103 bp upstream
Tssr110229 transcription start site region 110229 1083 bp upstream
Tssr110230 transcription start site region 110230 1046 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory