rs220725343 SNP Detail

Summary

• ID
  rs220725343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137445787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTAAGGT GAAGTGACAG GCTGTCGAGT
  TGCTAAGTGC AGAGTCCCAC GCAGGAAGAC TAGGGAGTTC AGGCATGTTC TTAGACCTGC
  ACTCAGAATT CGGTTTCTCT TGCCGGGAGC TTTCCCATCA GGCCATCTGC TAAAGGTGCT
  Y
  TGTTAGCTTC ACCCATTGTG AAGGAGGTGT ATCACTCTTA CTGGGTTTTT TTTCTTGGAT
  TTTCCCTTTC AGCAATACTG ACTTCATTGT TCAGTGATGG ACTCTGTTTG GGGGTGCCAA
  GATAGGGTTG GGATAAGGAA GGGCTGAGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321366745	CHEV_4_137274391	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220725343					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137445787 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	1484 bp downstream
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	1014 bp proximal
Rr100343	regulatory region 100343	813 bp proximal
Tssr39776	transcription start site region 39776	1121 bp downstream
Tssr39777	transcription start site region 39777	1095 bp downstream
Tssr39778	transcription start site region 39778	738 bp upstream
Tssr39779	transcription start site region 39779	768 bp upstream
Tssr39780	transcription start site region 39780	1044 bp upstream
Tssr39781	transcription start site region 39781	1209 bp upstream