rs220727083 SNP Detail

Summary

• ID
  rs220727083
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90446459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTAAGC GTACGGAGGT
  GAACCTGGGA GAGTGTGGTG GACATTCAGA ACTCCAGACC AAGGAAAGAG GTGGGGACCA
  GACTTGGGGG CGGGAGGGTG GGGCTGGAGT GGCTGAGATC CAGGGGCATG GTCAGGGCAA
  TTTGGGCTTT TGGAAAAGTC AGCAAGCCAG GATCAGGTGG GCGGGGGTAG GGGGTGGAGT
  S
  GGGGAGAGCC TCCTGGTTGC TCAATGATGA ATCAGTCCAG GAGACTATGA GAACATTGGG
  GGGAAGGGTG GGGCCTAAGG TGAAAGGCCC CTTTAGGGGA AGGCCCTTTG AAGTGATTCC
  TTATTTCTGC TTTTTAGGAA GGCTTCAGTG TACACTGGTA TCCCATGTCC TCATAACCCC
  CAACTCTCAT TCCAAGACTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358834124	MGP_WTSI_3_90343074	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs220727083					SNP	G	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358834124	MGP_WTSI_3_90343074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90446459 () rs orientation: forward

Symbol	Name	Function Class
Rr580396	regulatory region 580396	1827 bp distal
Rr580397	regulatory region 580397	899 bp distal
Rr580398	regulatory region 580398	1695 bp proximal
S100a16	S100 calcium binding protein A16	within coordinates
Tssr30217	transcription start site region 30217	1911 bp downstream
Tssr30218	transcription start site region 30218	1882 bp downstream
Tssr30219	transcription start site region 30219	1848 bp downstream
Tssr30220	transcription start site region 30220	1826 bp downstream
Tssr30221	transcription start site region 30221	1766 bp downstream
Tssr30222	transcription start site region 30222	493 bp upstream
Tssr30223	transcription start site region 30223	523 bp upstream