rs220727336 SNP Detail

Summary

• ID
  rs220727336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:16111109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCACCCG CGCGCGCGCA
  CCCAGGGGCC GAGGGCCGGG GCTCCCGGGC GCGGATCCGC GGCGTGCGCC TTTGGTGTCA
  GCTAGGGCCG TGCTCGGTGC ACAGCGTCTG CGGGACGGCT GAGCGTCCGC GCGAGCGGCG
  CGGGTGGGCA ATGGCGTGCA GTGCGGTGGT CGGCCAGCGT CCATTGTGGC GCGTTGTGGG
  R
  TGGAGAGGGA AGGGTGGAAA CGGGGAGCAG ACCCCGGTCT GGATTCTGCT AGGAAAGGTG
  CTGAGGAAGC CTTGGCTGGC GCTCCAATAA ACCCGGGTTA ACGTACTGGG CAGGGGCGGG
  GCGGGAAGAC TAGCCCAAAT GTGCTATACT GTAGCCACCA GGCCACTGAC AGGAGTGACC
  CCAGAGAGTT GCATGGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401853782	MGP_WTSI_19_16208235	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220727336					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401853782	MGP_WTSI_19_16208235	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:16111109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10651	CpG island 10651	within coordinates
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	Intron
Rr544689	regulatory region 544689	904 bp distal
Rr544690	regulatory region 544690	1124 bp distal
Rr544691	regulatory region 544691	1045 bp distal
Rr544692	regulatory region 544692	within coordinates
Rr544693	regulatory region 544693	1375 bp proximal
Tssr155379	transcription start site region 155379	1024 bp downstream
Tssr155380	transcription start site region 155380	972 bp downstream
Tssr155381	transcription start site region 155381	950 bp downstream
Tssr155382	transcription start site region 155382	835 bp downstream
Tssr155383	transcription start site region 155383	600 bp downstream
Tssr155384	transcription start site region 155384	417 bp downstream