rs220732012 SNP Detail

Summary

• ID
  rs220732012
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141389457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGTGATC TTAACTGCTG
  AGCCATCTCT CCAGCCCCGG AGCTGAACTT TCTAGCTGTT GTTTTGTTTT GTGAGGTTTT
  TGTTTGTTTG TTTCTGGTTG GTTGGTTTGT TTTGGTTTTA TTTTATTAAA TTTAAAAAAA
  TTTAAAAAGA TTTATTTCTT ATTATATCTA AGTACACTGT AGCTGTCTTC AGAAGAGGGC
  A
  TCAGATCTCA TTACAGATGG TTGGGAGCCA CCACATGGTT GCTGGGATTT GAACTCAGGA
  CCTTTGTCCT GAATAGTCAG TGCTCTTAAC CCGTGAGCCA TCTCTCCAGC CCTTGGTTTT
  ATTTTTAGAG ACAGGGTTTC TTCATTTAGC CTTCCCTGCC TGTGGTAGCA CTCTCCTCTG
  TAGACCAGGC TGGCCTTGAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388826	CHEV_4_141218061	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220732012					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141389457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54266	predicted gene, 54266			1949 bp upstream
Gm70264	predicted gene, 70264			1108 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2			Intron
				Noncoding-Transcript-Variant
Rr603850	regulatory region 603850			1459 bp proximal
Rr603851	regulatory region 603851			1962 bp proximal
Tssr44355	transcription start site region 44355			1853 bp downstream
Tssr44356	transcription start site region 44356			1917 bp downstream